PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010533435.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Cleomaceae; Tarenaya
Family MYB_related
Protein Properties Length: 176aa    MW: 19486 Da    PI: 9.5758
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010533435.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.85.1e-08105143347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      +WT+eE++l++ + ++ G+       r + k+Rt+ q+ s+ qky
   XP_010533435.1 105 PWTEEEHKLFLLGLHKVGKS------RNFVKTRTPTQVASHAQKY 143
                      7*****************88......77778*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.06798148IPR017930Myb domain
SuperFamilySSF466891.28E-14100149IPR009057Homeodomain-like
TIGRFAMsTIGR015571.4E-11101146IPR006447Myb domain, plants
PfamPF002494.1E-6105143IPR001005SANT/Myb domain
CDDcd001674.65E-6105144No hitNo description
Gene3DG3DSA:1.10.10.605.2E-4105143IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MAAENSSSSE TTGGCVGGGA RKEIMLFGVR VVVDPMRKCV SLNNLSEYEQ PEEMTKKIGR  60
GGDVDRGEEK NTVEVAVAAG YVSADDAVPI SSSSGGNRER KRGIPWTEEE HKLFLLGLHK  120
VGKSRNFVKT RTPTQVASHA QKYFLRRSNL NRRRRRSSLF DMTTETVISD LLCFSE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010533435.11e-128PREDICTED: transcription factor MYB1R1-like
SwissprotQ2V9B04e-50MY1R1_SOLTU; Transcription factor MYB1R1
TrEMBLD7KS567e-63D7KS56_ARALL; Myb family transcription factor (Fragment)
STRINGfgenesh2_kg.2__1750__AT1G74840.12e-62(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM24612669
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19000.22e-61MYB_related family protein